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Omega-3s for Joint Health: Fish Oil vs. Alternatives

By Amanda Brooks, MS, CNS|Updated February 2026|5 min read

Omega-3 fatty acids are the most underrated joint supplement. While everyone obsesses over glucosamine, the anti-inflammatory effects of EPA and DHA often produce faster, more noticeable improvements in dogs with arthritis. I've discussed omega-3 protocols extensively with Dr. Patricia Delaney, a board-certified veterinary nutritionist at UC Davis, and the research strongly supports high-dose supplementation.

But not all omega-3 sources are created equal. Let me walk you through what works, what doesn't, and what I actually use for my own working dogs.

Dog receiving a health checkup

Understanding EPA and DHA

Two omega-3 fatty acids matter for joint health: eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA). Both reduce inflammation, but through different mechanisms.

EPA: The Anti-Inflammatory Powerhouse

EPA competes with arachidonic acid for cyclooxygenase enzymes, reducing production of pro-inflammatory prostaglandins. For joint health, EPA is the star player. A 2010 study in JAVMA showed dogs receiving high-EPA fish oil (2,200mg EPA per day) had significantly improved weight-bearing compared to controls.

Canine wellness examination

DHA: Brain and Eye Health, Some Joint Benefits

DHA is critical for brain and retinal function but plays a supporting role in joint inflammation. Most fish oils contain more DHA than EPA, which isn't optimal for arthritis support. Look for products with EPA:DHA ratios of at least 1.5:1 or higher.

Fish Oil: Still the Gold Standard

Why Fish Oil Works

Fish oil provides preformed EPA and DHA that dogs can use immediately. Unlike plant-based omega-3s (ALA from flaxseed), dogs don't need to convert anything. Absorption rates for quality fish oil reach 70-80%. When combined with properly dosed glucosamine and chondroitin, omega-3s form a powerful joint support foundation.

Therapeutic Dosing for Joint Health

Dog WeightDaily EPA+DHA (mg)Approximate Fish Oil Volume
Under 20 lbs500-750mg1/2 teaspoon quality oil
20-40 lbs1,000-1,500mg1 teaspoon quality oil
40-60 lbs1,500-2,000mg1.5 teaspoons quality oil
60-80 lbs2,000-2,500mg2 teaspoons quality oil
Over 80 lbs2,500-3,500mg2.5-3 teaspoons quality oil
Dosing Note: These are therapeutic doses for joint support, not maintenance doses. Many commercial pet fish oils recommend much lower amounts. For active arthritis, you need the higher range. I dose my 55-pound Border Collie at 2,000mg EPA+DHA daily.

Quality Markers for Fish Oil

Not all fish oil is safe. Oxidation and contamination are real concerns. Look for:

  • IFOS Certification: International Fish Oil Standards testing for purity and potency
  • Low peroxide values: Under 5 mEq/kg indicates freshness
  • Species disclosure: Anchovy, sardine, and mackerel are lower in contaminants than tuna or salmon
  • Triglyceride form: Absorbs better than ethyl ester forms
Oxidation Warning: Rancid fish oil does more harm than good. If it smells strongly fishy or "off," throw it away. Store opened bottles in the refrigerator and use within 3 months.

Fish Oil Alternatives

Algae Oil: Vegan-Friendly Option

Algae oil provides DHA directly (fish get their omega-3s from eating algae). Newer products now include EPA as well. For owners who prefer non-fish sources, algae oil is legitimate.

The catch: algae oil typically costs 2-3 times more than equivalent fish oil. And some dogs find the taste less palatable. I've used Nordic Naturals Algae Omega for clients with fish allergies, and it works well at the same EPA+DHA doses.

Green-Lipped Mussel: Unique Fatty Acid Profile

Perna canaliculus from New Zealand contains EPA and DHA plus a unique omega-3 called eicosatetraenoic acid (ETA). ETA may provide additional anti-inflammatory benefits through a different pathway than EPA.

A 2013 study in BMC Veterinary Research showed GLM powder improved joint function scores in arthritic dogs. The dosing is different from fish oil:

Dog WeightDaily GLM PowderNotes
Under 25 lbs500mgCan combine with fish oil
25-50 lbs750-1,000mgLook for cold-processed only
50-80 lbs1,000-1,500mgSplit dose AM/PM
Over 80 lbs1,500-2,000mgMay reduce fish oil dose if combining

I add GLM to my arthritis protocol as a complement to fish oil, not a replacement. The ETA provides something fish oil doesn't.

What Doesn't Work: Flaxseed Oil

Flaxseed oil contains alpha-linolenic acid (ALA), a plant-based omega-3. Dogs can convert ALA to EPA and DHA, but the conversion rate is terrible: roughly 5-10% for EPA, and even less for DHA.

To get 1,000mg of EPA from flaxseed, you'd need to give approximately 15,000mg of ALA. That's an unrealistic amount that would cause digestive upset. For joint health, skip the flaxseed and use fish oil.

Cost-Benefit Analysis

Let's be real about what quality omega-3 supplementation costs for a large dog:

SourceMonthly Cost (60lb dog)Effectiveness Rating
Quality Fish Oil (Nordic Naturals, Grizzly)$20-30Excellent
Budget Fish Oil (Kirkland, generic)$10-15Good (check freshness)
Algae Oil$35-50Excellent (if EPA included)
Green-Lipped Mussel Powder$20-35Good (unique benefits)
Flaxseed Oil$8-12Poor (low conversion)

My recommendation: quality fish oil provides the best value for joint health. Add GLM if budget allows, especially for dogs with active arthritis. For a complete supplement stack at each life stage, refer to the age-by-age protocol guide.

My Personal Protocol

For my working Border Collies and Australian Shepherd, here's the omega-3 component of their joint stack:

  • Nordic Naturals Omega-3 Pet: 2,000mg EPA+DHA daily (split AM/PM)
  • Blackmores GLM powder: 1,000mg daily (mixed into dinner)
  • Whole sardines: 2-3 sardines weekly as a whole food source

I spend about $35-40 per month per dog on omega-3s. That's not cheap, but the anti-inflammatory benefits are real and visible. My 9-year-old Border Collie Finn has noticeably less morning stiffness since I increased his fish oil dose.

Interactions and Cautions

High-dose omega-3s can affect blood clotting. If your dog is on blood thinners or scheduled for surgery, reduce fish oil for 7-10 days beforehand. Always inform your veterinarian about supplement use.

Some dogs get soft stools from high fish oil doses. Start at half the therapeutic dose and increase gradually over 2-3 weeks. If loose stools persist, try a different brand or reduce the dose slightly.

About the Author

Amanda Brooks, MS, CNS

Canine nutritionist with expertise in raw feeding and performance diets for working dogs. My Master's research at Oregon State University focused on fatty acid metabolism in canines. I've formulated omega-3 protocols for competitive agility dogs, search and rescue teams, and ranch working herding dogs across the Pacific Northwest.

Canine Joint Health

Evidence-based guidance for maintaining your dog's joint health through nutrition, supplementation, and therapy.

Medical Disclaimer: Content is for informational purposes only. Always consult your veterinarian before starting any supplement protocol.

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About the Author

Amanda Brooks, MS, CNS

Canine Nutritionist

12 years formulating supplements

Portland, Oregon

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